Develop integration modeling approach for discovery neuraminidase inhibitors in silico based on pharmacophore and CoMSIA models

Kuei Chung Shih*, Chun Yuan Lin, Jiayi Zhou, Shih Han Huang, Chuan Yi Tang

*Corresponding author for this work

    Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

    Abstract

    Neuraminidase (NA) is an important target for influenza A virus treatment, such as Zanamivir and oseltamivir both are sialic acid analog inhibitors of NA. Quantitative Structure-Activity Relationships is a widely adapted computational method that correlates the structural properties of compounds with their biological activities. The pharmcophore model can be easily and quickly used to recognize the related inhibitors, and fit the binding site interaction features of protein structure. The Comparative Molecular Similarity Index Analysis model is easily used to modify the molecule structure optimization, and describe the limit range of molecule weights. In this study, we propose a combination application approach to integrate these two models based on the same training set inhibitors to identify NA inhibitor candidates. Hence, discovering novel NA inhibitors can be screened and optimized by using our drug design approach.

    Original languageEnglish
    Title of host publication2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010
    Pages518-524
    Number of pages7
    DOIs
    StatePublished - 2010
    Event2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010 - HongKong, China
    Duration: 18 12 201021 12 2010

    Publication series

    Name2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010

    Conference

    Conference2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010
    Country/TerritoryChina
    CityHongKong
    Period18/12/1021/12/10

    Keywords

    • CoMSIA
    • Neuraminidase
    • Pharmacophore

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