Genome-wide alternative splicing events detection through analysis of large scale ESTs

F. R. Hsu; Hwan You Chang; Yaw Lin Lin; Yin Te Tsai; Hui Ling Peng; Ying Tsong Chen; Che Feng Chen; Chia Yang Cheng; Chia Hung Liu; Min Yao Shih

doi:10.1109/BIBE.2004.1317358

Genome-wide alternative splicing events detection through analysis of large scale ESTs

F. R. Hsu, Hwan You Chang, Yaw Lin Lin, Yin Te Tsai, Hui Ling Peng, Ying Tsong Chen, Che Feng Chen, Chia Yang Cheng, Chia Hung Liu, Min Yao Shih

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Abstract

In the past several years, the analysis of alternative splicing and its application to identify the origins of disease has been gaming momentum. Therefore, we developed a value added transcriptome database (Avatar). We maped EST (expressed sequence tag) and mRNA sequences onto whole human genomic sequence. We identified 9,937 alternative splicing relationships genes through an analysis of large-scale ESTs. Besides, we provided alternative splicing information for six organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Caenorhabditis elegans, Drosophila melanogaster and Arabidopsis thaliana.

Original language	English
Title of host publication	Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004
Pages	310-316
Number of pages	7
DOIs	https://doi.org/10.1109/BIBE.2004.1317358
State	Published - 2004
Externally published	Yes
Event	Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004 - Taichung, Taiwan Duration: 19 05 2004 → 21 05 2004

Publication series

Name	Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004

Conference

Conference	Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004
Country/Territory	Taiwan
City	Taichung
Period	19/05/04 → 21/05/04

Keywords

Alternative splicing
EST

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1109/BIBE.2004.1317358

Cite this

Hsu, F. R., Chang, H. Y., Lin, Y. L., Tsai, Y. T., Peng, H. L., Chen, Y. T., Chen, C. F., Cheng, C. Y., Liu, C. H., & Shih, M. Y. (2004). Genome-wide alternative splicing events detection through analysis of large scale ESTs. In Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004 (pp. 310-316). (Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004). https://doi.org/10.1109/BIBE.2004.1317358

@inproceedings{a639da5afede4a5ea3c66c8efb025312,

title = "Genome-wide alternative splicing events detection through analysis of large scale ESTs",

abstract = "In the past several years, the analysis of alternative splicing and its application to identify the origins of disease has been gaming momentum. Therefore, we developed a value added transcriptome database (Avatar). We maped EST (expressed sequence tag) and mRNA sequences onto whole human genomic sequence. We identified 9,937 alternative splicing relationships genes through an analysis of large-scale ESTs. Besides, we provided alternative splicing information for six organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Caenorhabditis elegans, Drosophila melanogaster and Arabidopsis thaliana.",

keywords = "Alternative splicing, EST",

author = "Hsu, {F. R.} and Chang, {Hwan You} and Lin, {Yaw Lin} and Tsai, {Yin Te} and Peng, {Hui Ling} and Chen, {Ying Tsong} and Chen, {Che Feng} and Cheng, {Chia Yang} and Liu, {Chia Hung} and Shih, {Min Yao}",

year = "2004",

doi = "10.1109/BIBE.2004.1317358",

language = "英语",

isbn = "0769521738",

series = "Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004",

pages = "310--316",

booktitle = "Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004",

note = "Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004 ; Conference date: 19-05-2004 Through 21-05-2004",

}

Hsu, FR, Chang, HY, Lin, YL, Tsai, YT, Peng, HL, Chen, YT, Chen, CF, Cheng, CY, Liu, CH & Shih, MY 2004, Genome-wide alternative splicing events detection through analysis of large scale ESTs. in Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004. Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004, pp. 310-316, Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004, Taichung, Taiwan, 19/05/04. https://doi.org/10.1109/BIBE.2004.1317358

Genome-wide alternative splicing events detection through analysis of large scale ESTs. / Hsu, F. R.; Chang, Hwan You; Lin, Yaw Lin et al.
Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004. 2004. p. 310-316 (Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Genome-wide alternative splicing events detection through analysis of large scale ESTs

AU - Hsu, F. R.

AU - Chang, Hwan You

AU - Lin, Yaw Lin

AU - Tsai, Yin Te

AU - Peng, Hui Ling

AU - Chen, Ying Tsong

AU - Chen, Che Feng

AU - Cheng, Chia Yang

AU - Liu, Chia Hung

AU - Shih, Min Yao

PY - 2004

Y1 - 2004

N2 - In the past several years, the analysis of alternative splicing and its application to identify the origins of disease has been gaming momentum. Therefore, we developed a value added transcriptome database (Avatar). We maped EST (expressed sequence tag) and mRNA sequences onto whole human genomic sequence. We identified 9,937 alternative splicing relationships genes through an analysis of large-scale ESTs. Besides, we provided alternative splicing information for six organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Caenorhabditis elegans, Drosophila melanogaster and Arabidopsis thaliana.

AB - In the past several years, the analysis of alternative splicing and its application to identify the origins of disease has been gaming momentum. Therefore, we developed a value added transcriptome database (Avatar). We maped EST (expressed sequence tag) and mRNA sequences onto whole human genomic sequence. We identified 9,937 alternative splicing relationships genes through an analysis of large-scale ESTs. Besides, we provided alternative splicing information for six organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Caenorhabditis elegans, Drosophila melanogaster and Arabidopsis thaliana.

KW - Alternative splicing

KW - EST

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BT - Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004

T2 - Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004

Y2 - 19 May 2004 through 21 May 2004

ER -

Hsu FR, Chang HY, Lin YL, Tsai YT, Peng HL, Chen YT et al. Genome-wide alternative splicing events detection through analysis of large scale ESTs. In Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004. 2004. p. 310-316. (Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004). doi: 10.1109/BIBE.2004.1317358

Genome-wide alternative splicing events detection through analysis of large scale ESTs

Abstract

Publication series

Conference

Keywords

UN SDGs

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