System identification and robustness analysis of the circadian regulatory network via arx stochastic interactive model

Cheng Wei Li, Wen Chieh Chang, Bor Sen Chen

Research output: Contribution to journalJournal Article peer-review

Abstract

The circadian regulatory network is one of the main topics of plant investigations. The intracellular interactions among genes in response to the environmental stimuli of light are related to the foundation of functional genomics in plant. However, to determine what genes and how much they influence each other through transcriptional binding or physical interaction using biological assays is not easy. In this study, we detected the interactive relationships of genes in the circadian regulatory network via a systematically stochastic modeling analysis in silico. After the successful construction of the circadian regulatory network, we would analyze the stochastic system under different assumed biological conditions by performing dry experiments and discover the essential robustness (or sensitivity) characteristics of the circadian regulatory network by biological perturbations. In short, we can construct and analyze a genetic regulatory pathway of circadian network from the systems biology viewpoint.

Original languageEnglish
Pages (from-to)37-55
Number of pages19
JournalInternational Journal of Computational Intelligence in Control
Volume12
Issue number2
StatePublished - 01 07 2020
Externally publishedYes

Bibliographical note

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